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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Pseudoroegneria spicata
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Brachypodium distachyon
,
Triticum aestivum
ABOUT THIS RECORD
ID:
MNEST046182
species:
Hordeum vulgare
miRNA family:
MIR444
source:
microPC, original name:
miR444
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCAGTTGCTGCCTCAAGCTT
miRNA*
GCATGAGGCAACAACTGCAGT
mismatches:
2
bulges:
0
View larger
pre-miRNA
ACCAA
GCATGAGGCAACAACTGCAGT
ACTTGTGGGGAAGGCACAAGTAGGACACCAACATTACCTGCAAGCAAGACGCAAAATTAATAGAACATCACCAT
ACTTGTGGCTTTCTTGCAAGTCG
TGCAGTTGCTGCCTCAAGCTT
dot-bracket secondary structure
...((
((.(((((((.((((((((..
(((((..((((((.((((((((((...................((.....))..........(.....).)).)
))))))).))))))..)))))..
)))))))).))))))).))))
SIMILARITIES
miRBase
hvu-MIR444a
:
5e-56
PMRD
tae-miR444
:
8e-52
microPC
miR444
:
4e-78
UniProt
no hits
RFAM
MIR444: 8e-77
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
degradome data
download this record